Package index
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covariance_combiner() - EM Covariance Combiner
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covcomb_compute_conditional_expectation() - Compute conditional expectation for the E-step of the EM algorithm
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covcomb_compute_log_likelihood() - Compute the observed data log-likelihood
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covcomb_compute_sampling_covariance() - Compute the sampling covariance matrix for the combined covariance matrix
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covcomb_initialize_psi() - Initialize the combined covariance matrix using available variances
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getAllTrialMetaData() - Retrieve metadata on all trials for a given crop
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getGenoProtocolFromGermVec() - Determine genotyping protocol metadata for a set of accessions
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getGenoProtocolFromSingleGerm() - Get genotyping protocol metadata for a single germplasm
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getGermplasmFromSingleTrial() - Get germplasm metadata for a single trial via BrAPI
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getGermplasmFromTrialVec() - Get germplasm metadata for multiple trials
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getLatLongElevFromLocationVec() - Get location info from a vector of locations via BrAPI
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getTraitsFromSingleTrial() - Get traits measured from a single trial via BrAPI
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getTraitsFromTrialVec() - Retrieve what traits were measured for a set of trials by study IDs
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getTrialMetaDataFromTrialVec() - Retrieve metadata for a set of trials by study IDs
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makeRowFromGermResult() - Convert a BrAPI germplasm result into a single-row data frame
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makeRowFromTrialResult() - Convert a BrAPI study result into a single-row data frame
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matrix_to_vector_idx() - Map matrix indices to vector index for covariance parameters